PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g110010.1
Common NameMTR_3g110010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 759aa    MW: 87458.1 Da    PI: 9.6179
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g110010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.8e-10633679955
                      CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      rk +N  +ArrsR+RK+a + eLe  v +L+ eN +L k+    +++
  Medtr3g110010.1 633 RKVSNPKSARRSRRRKQAHLFELESQVGKLKLENATLYKQFTDASQQ 679
                      99***********************************9876655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.101.3E-1711280IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF813832.62E-101163IPR001810F-box domain
PROSITE profilePS5018110.2921265IPR001810F-box domain
PfamPF006464.7E-51446IPR001810F-box domain
SMARTSM002568.9E-41859IPR001810F-box domain
SuperFamilySSF520581.26E-765382IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077238.9E-8159184IPR013101Leucine-rich repeat 2
PfamPF077230.001251275IPR013101Leucine-rich repeat 2
SMARTSM003380.0021629689IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.3E-8633681No hitNo description
PROSITE profilePS502178.749633679IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-8633680No hitNo description
CDDcd147021.41E-8633681No hitNo description
PROSITE patternPS000360633647IPR004827Basic-leucine zipper domain
PfamPF001701.1E-7633673IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSRRLRISFR RKDRISDLPD TLLHEILSFL PTKDAAATTI LSKRWNPLFL SQLMLRFDDH  60
SFTDHFAFRK FFYSFMSMRD KSLPILSFQL NCRYSFIDKN DFNNLVYAAI TSGVENLSIN  120
LCHLNETTLP SFILTSKTLT SLKLKRVTLN EVPFVDLPSL KVLHLESVTF TCPEYLMKLL  180
SSCPILEKLE ANDSITTTFF KVIGRDRGEF IKCRYSETIL PSFILTTKTL TQLKLKRITL  240
NQVPFVDLPL LKVLHLESVS FTYYWYITTL LSGCPVLEEL EAKDVIVTRR CMVIRTGREV  300
LNLSNLVRAN ISNGLLEFDW LYNVNLLRIQ ETVPVYLHGM FPNLTHLELI FNFMPIFASL  360
KWNCLMKQLL PNFPKLQTLI IRESTKHHDN SECRIRRDKY KAPNVHGVVI FVPKDFSHHM  420
STFIYLNDIA CNSSSLKLVT NKSETLFILD LEIVCLRTIT YPLIFTIYAK SCYDFLETKC  480
ACGCVWDRLK VAHVRLLVDS TYATNAIAVH ISLPPREHHI SVIWLKIPTK AEETAPKDVY  540
RKRKSCRPSP SDRVARETMT GVQEDRISPF SADEKEQVCR GISSKKKSVV EWICLQPLKD  600
ESIRFISDIK FSLTLLCSRH CLLCVLMNQF PLRKVSNPKS ARRSRRRKQA HLFELESQVG  660
KLKLENATLY KQFTDASQQF HEADTNNQVL KSDVEALRAK VKLVKHIVTR SSFITSLNNQ  720
FLHNQCQMST PPQLNTTTSI RCMPHVSPTI NVQQGNSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1641648RRSRRRKQ
2643648SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226431e-109root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g110010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635657.10.0FBD-associated F-box protein At4g10400-like
RefseqXP_024635687.10.0FBD-associated F-box protein At4g10400-like
TrEMBLA0A072VCV80.0A0A072VCV8_MEDTR; BZIP transcription factor
STRINGAES836270.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-23basic leucine zipper 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]