PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g110122.1
Common NameMTR_3g110122
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family CPP
Protein Properties Length: 597aa    MW: 65811.1 Da    PI: 8.7226
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g110122.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-14146184241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      ++k+CnCk+skClk+YCeC+aag +C+  C+C++C+N+ +
  Medtr3g110122.1 146 KQKRCNCKNSKCLKLYCECYAAGIYCDG-CNCQNCHNNLN 184
                      79**************************.********976 PP
2TCR42.71.1e-13230268140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      +++kgC+Ckk  ClkkYCeCf+a++ Cse+CkC dCkN e
  Medtr3g110122.1 230 RHNKGCHCKK-GCLKKYCECFHANVLCSENCKCIDCKNFE 268
                      589*****99.5**************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-17145185IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.323146269IPR005172CRC domain
PfamPF036382.1E-11147182IPR005172CRC domain
SMARTSM011142.2E-17230270IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.3E-10233267IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MEKSETTLDL ANRKFARQLD FAAACGGPSY LTLSPPTPQS LSKTIPRPPT PSYLPPPAQM  60
HLDFQSPVRR PWKQSPPQWQ QQRTSQSPPV MPHFQSPRPQ LVSPVHRLPY STPKLPVKRF  120
QALNESPSPR SQSQNKAGLK DNTLKKQKRC NCKNSKCLKL YCECYAAGIY CDGCNCQNCH  180
NNLNNEAARK EAIGMTLEKN PNAFRPKIAS SPQKPEVSME EVSEIQLIGR HNKGCHCKKG  240
CLKKYCECFH ANVLCSENCK CIDCKNFEGS DVWRIVLQEE CSLVQIRQAT NAAINGAVGF  300
GPSISGTHIT PKKRKIQESF SGKSLTDQPV SMTAQHQRVL LCIIDTVSLD LFNNHLVTLS  360
VVGSPFKFTM SVLADVLQTQ NVKNLCSLLV VLSKEAAKTN AEMRGKAARK IKTEKYEASI  420
ASSSQLLQDS RNVVRASENH ANKDVADAVD IDIHNRPLSP ETLKLMCDEL DEMFFGNGSA  480
NGVAIDNAYQ NMIQKSSNSD GYTAVYAEQE RLILTKFRDV LGELIILGSI KETMHSSSVK  540
KDVSIEKTPK NNGDSGAETK GILLNNCTAN CSIPVATYAR TNGHDTTDLS LRLPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2214727811132Protein lin-54 homolog
5fd3_B1e-2214727811132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g110122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634048.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A072V2F60.0A0A072V2F6_MEDTR; Tesmin/TSO1-like CXC domain protein
STRINGAES835520.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-81Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]