PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g111880.1
Common NameMTR_3g111880
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 92aa    MW: 10537.9 Da    PI: 6.8039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g111880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-10551246
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +WTt   +++ +a ++l ++    W ++ar +g g+t +++k ++ +
  Medtr3g111880.1  5 SNWTTKQNKRFENALAMLDKDtpdLWQKVARAVG-GKTVEEVKRHYED 51
                     58********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.251257IPR017884SANT domain
SMARTSM007173.8E-6355IPR001005SANT/Myb domain
CDDcd001678.37E-5653No hitNo description
SuperFamilySSF466892.37E-11660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.600.001659IPR009057Homeodomain-like
PfamPF002492.4E-7652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MASSSNWTTK QNKRFENALA MLDKDTPDLW QKVARAVGGK TVEEVKRHYE DLVEDVRQIE  60
EGHVPLPNYT NNVGYSYIMD QDKRMKALSL H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-26291693RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.234531e-156leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g111880.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4684921e-150EF468492.1 Medicago truncatula MYB transcription factor MYB114 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462122.11e-63protein RADIALIS-like 4
SwissprotF4JVB85e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A072V2R83e-62A0A072V2R8_MEDTR; MYB family transcription factor
STRINGXP_004501011.14e-48(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-32RAD-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]