PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g113030.1
Common NameMTR_3g113030, NMH7
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26609.3 Da    PI: 9.6766
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g113030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.7e-30959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien++nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgkl+ey+s
  Medtr3g113030.1  9 KRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 59
                     79***********************************************86 PP
2K-box94.81.4e-3171169199
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      yq + g +l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++Ls++eL+ Le++++k+ k iR++K++++++qi++++kk ++ +e +++L
  Medtr3g113030.1  71 YQMTVGIDLWNSHYENMQENLKKLKDVNRNLRKEIRQRMGECLNDLSMEELRLLEDEMDKAAKAIRERKYKVITNQIDTQRKKFNNEREVHNRL 164
                      67788899*************************************************************************************9 PP

            K-box  95 rkkle 99 
                       + l+
  Medtr3g113030.1 165 LRDLD 169
                      98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.408161IPR002100Transcription factor, MADS-box
CDDcd002651.21E-38280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-37395IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1982167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.72384174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMFSS TGKLHEYISP  60
SASTKQFFDQ YQMTVGIDLW NSHYENMQEN LKKLKDVNRN LRKEIRQRMG ECLNDLSMEE  120
LRLLEDEMDK AAKAIRERKY KVITNQIDTQ RKKFNNEREV HNRLLRDLDA RAEDPRFEMM  180
DNGGEYESVI GFSNLGPRMF ALSLQPTHPN PHNGGASAAS DLTTYPLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-16159159MEF2C
5f28_B7e-16159159MEF2C
5f28_C7e-16159159MEF2C
5f28_D7e-16159159MEF2C
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Function -- GeneRIF ? help Back to Top
  1. MtNMH7 contribution to petal identity is more important than that of MtTM6, whereas MtTM6 plays a more important role in stamen identity than its paralog MtNMH7.
    [PMID: 23146152]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g113030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4120960.0JN412096.1 Medicago truncatula MADS-box transcription factor NMH7 (NMH7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603721.11e-173floral homeotic protein DEFICIENS
SwissprotE0CPH41e-110AP3_VITVI; Agamous-like MADS-box protein AP3
SwissprotP237061e-110DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLG7J4N11e-171G7J4N1_MEDTR; MADS-box transcription factor
STRINGAES739721e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  5. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  6. Roque E, et al.
    Functional specialization of duplicated AP3-like genes in Medicago truncatula.
    Plant J., 2013. 73(4): p. 663-75
    [PMID:23146152]
  7. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  8. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  9. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]