PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g113070.1

Common Name

MTR_3g113070

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

DBB

Protein Properties

Length: 225aa MW: 25543.8 Da PI: 6.8529

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g113070.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.7e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ +++lfC+ ++ lC +C H+ H+ Medtr3g113070.1 4 QCDVCNKRQASLFCTADEAALCSTCDHRVHHAnklaskHR 43 7****99*****************964446777776 PP
2	zf-B_box	17.3	9.7e-06	57	93	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ + e + fC++++ +C++C l+ H g Ht Medtr3g113070.1 57 PLCDICLERRGFVFCQEDRAIVCKECDLKVH-GvneHT 93 579999999999******************9.666776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	11.106	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	4.15E-6	3	47	No hit	No description
SMART	SM00336	2.6E-7	4	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.6E-6	4	43	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.674	54	101	IPR000315	B-box-type zinc finger
SMART	SM00336	9.5E-11	54	101	IPR000315	B-box-type zinc finger
CDD	cd00021	4.69E-7	57	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MKIQCDVCNK RQASLFCTAD EAALCSTCDH RVHHANKLAS KHRRFSLDHP NSPNHFPLCD 60 ICLERRGFVF CQEDRAIVCK ECDLKVHGVN EHTKKHNRFL LSGIKLHSPA PPPTLHEETG 120 NFTISEYLIN TIPGWKFEDF LDSPSSSVPS HELQHQNHIV HDDANYHIHE ENILVSFSSE 180 SMRRICVPQA PLYYSEKMDN RSNTVNFSSS LGDFTVPQIT IPPN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g113070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003603724.1	1e-167	B-box zinc finger protein 21
Swissprot	Q9LQZ7	6e-54	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	G7J4N4	1e-166	G7J4N4_MEDTR; Putative transcription factor interactor and regulator Znf-B family
STRING	AES73975	1e-167	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-56	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Medtr3g113070.1
Entrez Gene	11437113

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]