PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g115620.1
Common NameMTR_3g115620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 216aa    MW: 24447.5 Da    PI: 5.5777
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g115620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.4e-2080140257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      r+R+t+ + ql++Le+ F + n +p+++++++++ +l    +++e++V++WFqNrRa+ k+
  Medtr3g115620.1  80 RQRWTPMPIQLQILERIFDEgNGTPTKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 140
                      89*****************99**************************************97 PP
2Wus_type_Homeobox97.88.3e-3279142265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtP p Q++iLe+++++G  tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq
    Medtr3g115620.1  79 SRQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 142
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.0976141IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-1676144IPR009057Homeodomain-like
SMARTSM003891.8E-1278145IPR001356Homeobox domain
SuperFamilySSF466894.71E-1779143IPR009057Homeodomain-like
CDDcd000861.01E-1380142No hitNo description
PfamPF000461.3E-1780140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEAEHENSGG GGGLYVKVIM TDEQMELLRQ QISVYTTISD QLVEMHKSIT TQHDLAGLRL  60
GNLYCDPLMM ACSGHKITSR QRWTPMPIQL QILERIFDEG NGTPTKQKIK DITIELGQHG  120
QISETNVYNW FQNRRARSKR KQSSVPAGNH AEPEADTEVE SPKENKTCEE SDQVQFFESL  180
SPHRVKDMYL QSPDIGFEHL LGKIEVAGCY NSYFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARSKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.104770.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g115620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462298.11e-163WUSCHEL-related homeobox 8
SwissprotQ5QMM35e-71WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A072V4R91e-161A0A072V4R9_MEDTR; Putative transcription factor Homobox-WOX family
STRINGXP_004500856.11e-125(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-68WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]