PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g116070.1
Common NameMTR_3g116070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 354aa    MW: 40385.7 Da    PI: 7.142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g116070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.15.9e-52231511128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+ kv +++   +  ++evd++++ePw+Lp+++k +e+ewy Fs rd+ky+tg r+nrat++gyWkatgkdkev+s
  Medtr3g116070.1  23 LPPGFRFHPTDEELITFYLASKVFKNTYFNNVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATSAGYWKATGKDKEVYS 116
                      79************************9666455***************9889999**************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++l g+kktLvfykgrap+gekt+Wvmheyrl
  Medtr3g116070.1 117 CsSRSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 151
                      756777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-5618158IPR003441NAC domain
PROSITE profilePS5100553.19323167IPR003441NAC domain
PfamPF023651.8E-2624151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMLAMEEVLC ELSDHEKKNE QGLPPGFRFH PTDEELITFY LASKVFKNTY FNNVKFAEVD  60
LNRCEPWELP EMAKMGEREW YLFSLRDRKY PTGLRTNRAT SAGYWKATGK DKEVYSCSSR  120
SLLGMKKTLV FYKGRAPRGE KTKWVMHEYR LHSHHFSPSN TCKEEKKRNS LLQIQGHLGG  180
NPNLSPQKSC LPPTPLLLAT SFTQLDQNDQ LLSHSHNIFP LPTFQPSFSM INHTTRNNNN  240
SPSSELLFKS QQNYTMKQTI PKTEATFYDQ QKSIDDALNI RWIIDNNNNY ENSLFPVEME  300
MEMEMDGAAH DLIAFSGAAT NAEFRDISII NSRGGGGVVG PMGIDSWPHA QLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-44141516140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g116070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1310260.0AC131026.11 Medicago truncatula clone mth2-6e18, complete sequence.
GenBankAC1444820.0AC144482.13 Medicago truncatula clone mth2-10p1, complete sequence.
GenBankCU5710570.0CU571057.2 M.truncatula DNA sequence from clone MTH2-52O4 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024633445.10.0protein CUP-SHAPED COTYLEDON 3
TrEMBLG7J6G20.0G7J6G2_MEDTR; CUP-shaped cotyledon-like protein
STRINGAES741210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-87NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]