PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g116710.1
Common NameMTR_3g116710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 243aa    MW: 27388.4 Da    PI: 9.4382
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g116710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1263.1e-08104184790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      A+++GF +++ ks +   ng+ t  t+ C + g+ ++ k+k  ++r+   + +++C   l+  + ++g w ++  +  HnH+++
  Medtr3g116710.1 104 ARKLGFYIVIGKSDNG-GNGRNTFVTLICERGGSYTKYKRK--SRREIAGSVKCKCPFWLRGYLLTSGDWSLKVGDGRHNHDMT 184
                      899********99887.88889************9998888..67777777788888888888888***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-6104184IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVVPVDAPND DPAEIEHHIV LPVLLLEDVH NSGNAKSEKP PPPPPKLEIS LGDAKVEDHY  60
LNLIFHNSAP PPIHVVCIDQ REHFTTTHKF ATHNDLLEWV REKARKLGFY IVIGKSDNGG  120
NGRNTFVTLI CERGGSYTKY KRKSRREIAG SVKCKCPFWL RGYLLTSGDW SLKVGDGRHN  180
HDMTDVLKGH KTVGRLNPNE RVHLQEMVDS NIPPRQMLTN LRKRNCTTST AIKLFLINSR  240
LN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g116710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682640.0CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632927.11e-105protein FAR1-RELATED SEQUENCE 5
TrEMBLG7J7311e-180G7J731_MEDTR; FAR1 DNA-binding domain protein
STRINGAES741800.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]