PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g116770.2
Common NameMTR_3g116770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 399aa    MW: 44423.9 Da    PI: 6.9261
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g116770.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.1e-10201248455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr3g116770.2 201 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 248
                      8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17195266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-9195252No hitNo description
PROSITE profilePS5088815.618197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-17197264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7201248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9203253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLHCLNTTTN SGNLATESCS SDITVLERQR ERMKWQQQQH HQGYFNSAAM FCSSLQQQVD  60
NSEASSLAAD LLPLQMPTLD VTSSSISRTF SCPPLLPDPK LIHSSIAGKD KDNSSKKRKA  120
EKSHHNSKLK VVVGEIEIEN KDKRIKIGSE DGESKITGNP NTKKNCVAED TSNSKENSKV  180
SDVQKTDYIH VRARRGQATD SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI  240
INYVQSLQKQ VEFLSMKLAT VNPRLDFNID DLFEKEVFPN CDANASFQAM GMSTGLNSNN  300
PYLQFNSPQQ FVPYGGLDAG MNPSDMGLRR SISAPVSIPQ TFIDSSCFSQ QILPSTIWEG  360
DFQNLYNFNF DQARATSFPT QSQLFTGLVE ANNLKIEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118440.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g116770.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1405840.0BT140584.1 Medicago truncatula clone JCVI-FLMt-18N21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462329.10.0transcription factor bHLH63 isoform X1
RefseqXP_024634040.10.0transcription factor bHLH63 isoform X1
TrEMBLA0A072V3020.0A0A072V302_MEDTR; BHLH transcription factor
STRINGAES741860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-59cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]