PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g117320.1
Common NameMTR_3g117320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family DBB
Protein Properties Length: 228aa    MW: 25223.1 Da    PI: 6.4896
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g117320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-08444539
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      C+ +e+ e++ fC +++  lC+ C  ++H+       Ht+
  Medtr3g117320.1  4 QCDVCEKAEATMFCPSDEAALCHGCDHTIHRAnklatkHTR 44
                     7*****************************76788888875 PP
2zf-B_box25.33.1e-085592338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38
                      + C+ ++e +  lfC++++  lC++C l +H g   Ht
  Medtr3g117320.1 55 YPLCDICQERRGYLFCQEDRAILCRECDLPIH-GanqHT 92
                     689*****************************.446775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
CDDcd000216.59E-6347No hitNo description
PfamPF006438.1E-6444IPR000315B-box-type zinc finger
SMARTSM003367.3E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.81253100IPR000315B-box-type zinc finger
SMARTSM003361.2E-1453100IPR000315B-box-type zinc finger
PfamPF006431.4E-65492IPR000315B-box-type zinc finger
CDDcd000211.73E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKIQCDVCEK AEATMFCPSD EAALCHGCDH TIHRANKLAT KHTRFSLVHL NSKDYPLCDI  60
CQERRGYLFC QEDRAILCRE CDLPIHGANQ HTQKHNRFLL SGVKLSSNSL DPDSSSTSIV  120
SEARNYSSRS KANIIPTSVS NENASSSCMV EDNMASDTGS VSTSSISEYL IETIPGYCFE  180
DLLDASFPPN GFCKKQKQNH YSAFQYQDIH VNKFFFSSSN VCTSSSG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g117320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0196060.0CU019606.6 M.truncatula DNA sequence from clone MTH2-77H1 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603989.11e-169B-box zinc finger protein 20 isoform X1
SwissprotQ9LQZ76e-58BBX21_ARATH; B-box zinc finger protein 21
TrEMBLG7J7R41e-168G7J7R4_MEDTR; Putative transcription factor interactor and regulator Znf-B family
STRINGAES742401e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.13e-55DBB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  3. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  4. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  5. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  6. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  7. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]