PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g117790.2
Common NameMTR_3g117790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 429aa    MW: 48990.7 Da    PI: 7.4331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g117790.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.2e-11375423148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      +++W+++E++ l  ++k+ G g+Wk+I r      Rt+ ++k++w++++
  Medtr3g117790.2 375 KKKWSQWEEDNLRTGIKLIGEGNWKSILRSYAfDERTEVDLKDKWRNLK 423
                      689******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-11370424IPR009057Homeodomain-like
PROSITE profilePS5129416.212370427IPR017930Myb domain
SuperFamilySSF466891.27E-11372423IPR009057Homeodomain-like
SMARTSM007171.3E-8374425IPR001005SANT/Myb domain
PfamPF002493.6E-9375423IPR001005SANT/Myb domain
CDDcd116603.19E-15378424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MERLGWCLEF VLGESSIDSE CIKELIKVNY SVTEINNRNM RMIMLKFLED ELLSKASIDE  60
WMLELLEVLE KLLLIDCNDP SNPNPISHAM KSAYFYIAVE CTVKYLEAGG TSNYLQAAVD  120
RIWNRRFQKL EEGSYLLTPK WRLWKTLIND SLVDSQTMLR LASLSNTRKK AIKEVQRFLV  180
DARNNLVGPS FLHSVAAPAQ NQSHNESPME VDKDNGRLKG KASTTIVVVE EMATSTSFSK  240
IDPLPVNEAP KNKCNSVEFE TFANDPVPDS ICMTDIVRSD VAIEETNQEP QMENQSKDAN  300
VPNPQTCLNI NNDEANLTKA TSHHPSLMNP NSSARTHEAG TSRGTSRIRL RSPETKKLSP  360
LKEYEPKKIT KRRKKKKWSQ WEEDNLRTGI KLIGEGNWKS ILRSYAFDER TEVDLKDKWR  420
NLKRYESQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370376KRRKKKK
2371376RRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136443e-91flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g117790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0248760.0CU024876.6 M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence.
GenBankCU4682640.0CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462348.10.0uncharacterized protein LOC11418225 isoform X2
TrEMBLA0A072V4Y50.0A0A072V4Y5_MEDTR; Myb-like DNA-binding domain protein
STRINGAES742840.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-15TRF-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]