PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g408420.1
Common NameMTR_3g408420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 276aa    MW: 31831.7 Da    PI: 7.62
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g408420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46.1e-06728223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C++C+ksFs+   L  H++tH
  Medtr3g408420.1  7 ECHICNKSFSNGKALGGHMKTH 28
                     5********************9 PP
2zf-C2H213.50.00021197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C +C+++F    +L+rH   H
  Medtr3g408420.1 197 FECDICHEVFQYCKDLVRHEAIH 219
                      89*****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.115633IPR007087Zinc finger, C2H2
PfamPF139128.6E-10630IPR007087Zinc finger, C2H2
SMARTSM003550.033628IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.3E-4728IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-9728No hitNo description
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-9192219No hitNo description
PROSITE profilePS501579.951197224IPR007087Zinc finger, C2H2
PfamPF139120.0045197219IPR007087Zinc finger, C2H2
SMARTSM003550.33197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767244271IPR007087Zinc finger, C2H2
SMARTSM0035513244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MENNRRECHI CNKSFSNGKA LGGHMKTHLA KLPIPLKSPI NNQAPEHSVE STKHQTHSIS  60
TSSSSISNPK NPIHNLRALK RNFYHTLLNF GKNSVFDSFP KNPTGKRSKR GRRQFNLAED  120
NTIFNVAKKK EENTRFNVAE ENEEDTRFNT QIKLVYSDLD TEAAETLAII CVNEWKQVEE  180
KYYIEKKKVS ENGNIMFECD ICHEVFQYCK DLVRHEAIHK KNNNLSEEIG ISGKEYDVVN  240
EEVHKCTYCL KFFEFDHVLE EHKTVHLSNF SDSNP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g408420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459208.10.0zinc finger protein ZAT1
TrEMBLA0A072UTD10.0A0A072UTD1_MEDTR; Putative transcription factor C2H2 family
STRINGAES684421e-111(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-11C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]