PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g437790.1
Common NameMTR_3g437790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21593.4 Da    PI: 5.2085
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g437790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.71.7e-142268348
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklye 48
                     i+ + + + tfsk + gi+ KA ELS+LC+ e a+i++s++ +klye
  Medtr3g437790.1 22 IKKDEKPNMTFSKQKLGIFNKAIELSILCESETALIVISPDeNKLYE 68
                     777788899******************************97368887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.4981260IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-61434IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-81572IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-151584IPR002100Transcription factor, MADS-box
PfamPF003191.7E-122268IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-63449IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-64970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSKKIPMAAE RNNTRKRKKD EIKKDEKPNM TFSKQKLGIF NKAIELSILC ESETALIVIS  60
PDENKLYECG YPNYDAVIQR FLTGHTDENE KKNQQDDDIV ETLRLRYEAM QGKLNEEQEK  120
LEKLKATEAQ KSNSDFPYDW WNKSIDDMDL TSLEDITTSL DKLKINLSVA SQAKKFNLHP  180
IQENVC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11418RKRKK
21419RKRKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g437790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459373.21e-135agamous-like MADS-box protein AGL62
TrEMBLA0A072UUA31e-134A0A072UUA3_MEDTR; MADS-box transcription factor family protein
STRINGAES656534e-56(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.13e-13AGAMOUS-like 91
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]