PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g448650.1
Common NameMTR_3g448650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 181aa    MW: 21247.1 Da    PI: 10.2146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g448650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.94.3e-1597160265
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkak 65 
                      fYn YA++ GFs r+sk +++k+n+ i+++ fvC+++g+re++ ++ + ++r+ ra tr+gC+ +
  Medtr3g448650.1  97 FYNWYARMNGFSARRSKVRRNKNNE-IIQQIFVCYRQGFREKKLENnKIRKREARADTRCGCDQN 160
                      ********************96555.***************998884567778899999999754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.7105.8E-472124IPR023141Ammonia/methane monooxygenase, subunit B, helix hairpin domain
PfamPF031012.0E-1397175IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MTTNVRTRCP LTWTSKKRST NEPPYMTCYN SNDEQILSSS ENTSQFMEFG DIESDMKVGF  60
GFAIEGMEDI GKIDFKKLNA SDVMKFHFPN IAVAYTFYNW YARMNGFSAR RSKVRRNKNN  120
EIIQQIFVCY RQGFREKKLE NNKIRKREAR ADTRCGCDQN AYKTRLKNKS VEAWRTKRYA  180
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.228790.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g448650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1381301e-175AC138130.9 Medicago truncatula clone mth2-31d24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635691.11e-109putative protein FAR1-RELATED SEQUENCE 10 isoform X2
TrEMBLA0A072V5Y81e-132A0A072V5Y8_MEDTR; FAR1 DNA-binding domain protein
STRINGAES836835e-98(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-12FAR1-related sequence 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]