PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g463270.1
Common NameMTR_073s0023, MTR_3g463270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 390aa    MW: 43572.8 Da    PI: 8.6717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g463270.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003152175123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg+ F  + +L++H++  H
  Medtr3g463270.1 152 FPCTACGEIFQKPNLLENHQSAnH 175
                      89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
SuperFamilySSF563994.22E-15177388No hitNo description
Gene3DG3DSA:3.90.228.101.7E-4183293IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.102.1E-6323388IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MATIATFFNK FYYVLILIVH LGCFMFTVAA ATAGKQDNRQ LLPSKKRKIS PLSQPSSPSH  60
PKFKTHKTLS SSWHFIKHLF CKNSSKTVTT TPTTQSSPQS TITNTVKAST QSLISLVQPD  120
PSFQDPPRKK QSESDISADN NNLFFPLRND IFPCTACGEI FQKPNLLENH QSANHAVSEL  180
IGSDPGHNIV QIIFKSGWPE TNTFPNIHRI MKIHNSQKIL SKFEEYRETV KIKAARGVTR  240
RRDERCIADG NELMRFHCST FLCELGHNGD SSICSQQFCN ICGIIKSGFS PKLDGISTLS  300
TSWRAHVSIP DDIEREFKFM NVKRAMLVCR VIAGRVGSDL DDEVDKTDGG FDSVMARGES  360
GVYTRLDEEE LVVFNPRAVL PCFVIVYSV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.78700.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g463270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460192.10.0uncharacterized protein LOC25490836
TrEMBLG7ZYI50.0G7ZYI5_MEDTR; C2H2-like zinc finger protein
STRINGAES842730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]