PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g465760.1
Common NameMTR_3g465760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 71aa    MW: 8254.25 Da    PI: 9.1037
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g465760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1385.6e-121701076
             FAR1 10 vGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkw 76
                     +GFsvrk k+ +  ++++++  ++++C k+g++++e +     +   +ra +rt+Cka+++ + +kdg+w
  Medtr3g465760.1  1 MGFSVRKGKELYYdNDKKNTRLKDYYCFKQGFKNNEPEGeiVGEVAYQRADSRTNCKAMVRFNVSKDGEW 70
                     7******98765526666677899*********99998866677788*******************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-9170IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MGFSVRKGKE LYYDNDKKNT RLKDYYCFKQ GFKNNEPEGE IVGEVAYQRA DSRTNCKAMV  60
RFNVSKDGEW *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g465760.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1493041e-111AC149304.11 Medicago truncatula clone mth2-76g4, complete sequence.
GenBankAC1495811e-111AC149581.27 Medicago truncatula clone mth2-126m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452265.21e-42protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A072V8B39e-45A0A072V8B3_MEDTR; FAR1 DNA-binding domain protein
STRINGAES755862e-27(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]