PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g466890.1
Common NameMTR_3g466890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18842 Da    PI: 9.3877
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g466890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-101148441
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                      n+s r++t+ kR++ + K   EL +LC+++v+ i++s
  Medtr3g466890.1 11 VNDSARKITYNKRKKSLKKMVDELITLCGIDVCAILYS 48
                     599*********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002663.02E-17170No hitNo description
PROSITE profilePS5006612.839148IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-9159IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-19294IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-5222IPR002100Transcription factor, MADS-box
PfamPF003195.5E-131249IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-52237IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-53758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRTKVKLAFM VNDSARKITY NKRKKSLKKM VDELITLCGI DVCAILYSGY HSEPEVWPSP  60
LEVQRIITKF KSYSEVGQGR KKLNQESYLM ERIVKSKEKL VKVEKTNWEM EKSLILFECL  120
RQENFINTLN TNVLNDLACE INEKLKEITL KMNQLDTNES T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g466890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460433.22e-92agamous-like MADS-box protein AGL80
TrEMBLA0A072UYG11e-113A0A072UYG1_MEDTR; MADS-box transcription factor family protein
STRINGXP_004500453.11e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-32AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]