PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g467080.1
Common NameMTR_3g467080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18864 Da    PI: 10.2822
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g467080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.13e-151258449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyey 49
                       +s+r  tf kR+ngi+KK +E+S+LC++e+  ii+ +++ +++ +
  Medtr3g467080.1 12 TCDSKRRMTFRKRKNGIMKKINEISTLCGIEAGAIIYEQNNpEVQVW 58
                     56799***************************888886654256555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.185152IPR002100Transcription factor, MADS-box
CDDcd002661.41E-24285No hitNo description
PRINTSPR004041.5E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-24393IPR002100Transcription factor, MADS-box
PfamPF003199.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MARGKMKLAY ITCDSKRRMT FRKRKNGIMK KINEISTLCG IEAGAIIYEQ NNPEVQVWPS  60
DSGVRSVISR FRSLPGLERS KKMVDQEVFL RQSIGKVYEQ LKTQMKETRK KEMTNIIHHF  120
IHTTEFNGYL MSKPDLNDLS YVIDENLREV NQKMKGMRIE D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g467080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634671.15e-97agamous-like MADS-box protein AGL80
TrEMBLA0A072UY351e-116A0A072UY35_MEDTR; MADS-box transcription factor family protein
STRINGXP_004499447.13e-77(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-41AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]