PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g498825.1
Common NameMTR_3g498825
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 331aa    MW: 37298.7 Da    PI: 7.9558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g498825.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10157204455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr3g498825.1 157 SHSLAERVRREKISERMKKLQQLVPGC----DKVTGKALMLDEIINYVQSLQ 204
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-17151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-10151208No hitNo description
Gene3DG3DSA:4.10.280.104.8E-17153217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.961153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-11159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAAFSYQYHP FLVDSSFMLN MNTASPPPPS QFHPLHQDII NCVDQQSSKV TTTITENEPS  60
SLTKNLSPQS SMVLDKLENG DEQVTQKNSP TEKKRRTRNN TNPQSHDNAA EGKNKKQKKN  120
KEDEKAKAEK KDQRKCLDEP PTGYIHVRAR RGQATDSHSL AERVRREKIS ERMKKLQQLV  180
PGCDKVTGKA LMLDEIINYV QSLQNQVEFL SMKLTSVNPM FYDMATDLDT LLVRQEKLNN  240
LASPSTLSSV SHCNSPKQGT TFADTTTMTP TNIFQAANDY LLDTSASIFL QGQRSSNVVS  300
EDASHFWEVE DQRQKFLHSH GFNSNLCSFH *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.174850.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g498825.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1375310.0BT137531.1 Medicago truncatula clone JCVI-FLMt-15H6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461663.10.0transcription factor bHLH137
TrEMBLA0A072V2W20.0A0A072V2W2_MEDTR; Putative transcription factor bHLH family
STRINGXP_007137888.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-56bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]