PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g006575.1
Common NameMTR_4g006575, MTR_4g006600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 225aa    MW: 24965.1 Da    PI: 9.0635
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g006575.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176991123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  Medtr4g006575.1 69 FSCNYCQRKFYSSQALGGHQNAH 91
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-66696No hitNo description
PROSITE profilePS5015711.4276996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNLQCLKPSM DRKHKNDSSP QLVLDLSLSS KDPCGDSKSE LNLLNCFHAN LSESSSESSH  60
ENELDPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLARR GYTTSMASSL PSYGLCNKSL  120
GIQVHSMINK PSYQTPLFGF CSNGQNGWRR QNFDSQPAIG KLPLGNFHVR DEVESSFGGG  180
ISRVAMFPKR LANEGLGGYL FDSNTSHLQS KQEKLQKLDL SLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g006575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604205.21e-165zinc finger protein 1
RefseqXP_013454510.11e-165zinc finger protein 1
TrEMBLG7JD881e-164G7JD88_MEDTR; Putative transcription factor C2H2 family
STRINGAES864021e-164(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.19e-33zinc-finger protein 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]