PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g009260.1
Common NameMTR_4g009260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 208aa    MW: 22876.9 Da    PI: 11.0737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g009260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-2076125255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Medtr4g009260.1  76 NYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 125
                      59*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-1675134No hitNo description
SMARTSM003801.6E-3376139IPR001471AP2/ERF domain
PROSITE profilePS5103222.73476133IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2276133IPR016177DNA-binding domain
PfamPF008471.8E-1476125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2976133IPR001471AP2/ERF domain
PRINTSPR003677.1E-117788IPR001471AP2/ERF domain
PRINTSPR003677.1E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNIESFSHDP TTTITTTLNL PKHNPSLEGI AAIVGEQILF GPHHNKTTPS TCVSNPKTLT  60
LTEPTKTNNT NPLQKNYRGV RKRPWGRWSA EIRDRIGRCR HWLGTFDTAE EAARAYDAAA  120
RRLRGSKART NFKIPSVLPV PLSPTSSSSS SDMKGKNKKS VRNSVRKCCV VSSVGELFSG  180
VPEVRRERDN NDNGNGVFGG RSTRMVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1875134161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-17771321571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g009260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604308.21e-152ethylene-responsive transcription factor ERF084
SwissprotQ9M8M54e-25ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLG7JFP61e-151G7JFP6_MEDTR; AP2 domain class transcription factor
STRINGAES865051e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.17e-22ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]