PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g009540.1
Common NameMTR_4g009540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 332aa    MW: 37218 Da    PI: 6.4087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g009540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13150198255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +  h ++Er+RR+++ ++f  L   +P +      K +Ka+iL++A++Y+k+L+
  Medtr4g009540.1 150 CIDHIMAERKRRQELSEKFIALSATIPGL-----SKTDKASILREAIDYVKQLK 198
                      56799***********************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17145208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-13146201No hitNo description
PROSITE profilePS5088815.802148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10152197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-17153209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-15154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEESWENFHL DTELDCGDDY FIGDDFLQDI LLQTPPQSLM YSESENNSVT VNVNGGVEFV  60
GNMIKSNSSN SIVSQQHQPQ EQEQEHGLKS KKVPRRSSSP KTYILSFDNS TMIPATPNYK  120
NKRSHESNQK SEMKINQQNG VKRGRSSSQC IDHIMAERKR RQELSEKFIA LSATIPGLSK  180
TDKASILREA IDYVKQLKER VDELEKQDKN VGVTPVMVLR KPYSCGNNNY NEDTNSSETS  240
CDGDCKNNIL PEIEAKVIGK EVLIEIHCEK QNGIELKLFN HIENLQLFVT GSSVLPFGKS  300
AISITIIAQM GGGYKVTVND LVKSIRKVLL K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.183661e-180root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g009540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1384650.0AC138465.40 Medicago truncatula clone mth2-23h19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604325.10.0transcription factor bHLH18
TrEMBLG7JFR30.0G7JFR3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES865220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-42bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]