PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g021580.1
Common NameMTR_4g021580
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 668aa    MW: 74194.5 Da    PI: 6.6602
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g021580.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24121221198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+lt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + ++
  Medtr4g021580.1 121 FCKILTASDTSTHGGFSVLRKHATEClppldMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGEN 212
                      99*****************************77777888*************************************************..4499 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      +el+v+v+r
  Medtr4g021580.1 213 GELRVGVRR 221
                      99*****98 PP
2Auxin_resp98.59.6e-33247328183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr+  s+F+v+v+k+++a+++k++vGmRf+m+fe++ds+e  +r+sGt+vgv+d++p +W nSkWrsLk
  Medtr4g021580.1 247 ASHAVATQTLFVVYYKPRT--SQFIVSVNKYLSAVSNKFAVGMRFRMRFESDDSAEsdKRFSGTIVGVEDISP-HWANSKWRSLK 328
                      789***************6..9*******************************97633678**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-40112250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-41114236IPR015300DNA-binding pseudobarrel domain
CDDcd100177.05E-21119221No hitNo description
SMARTSM010194.1E-23121223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308121223IPR003340B3 DNA binding domain
PfamPF023622.9E-22121221IPR003340B3 DNA binding domain
PfamPF065072.4E-30247328IPR010525Auxin response factor
PfamPF023098.7E-7528591IPR033389AUX/IAA domain
PROSITE profilePS5174526.311555636IPR000270PB1 domain
SuperFamilySSF542771.37E-11556631No hitNo description
PfamPF023094.0E-6599639IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLNHGSNVSA EVGGCSDEEL WKAIAGPLVD VPCVGQSVFY FPQGHMEQLE ASTNQELNQR  60
IPVLKLPTKI LCRIVNIHLL AEQETDEVYA QITLVPESNQ NEPTIPDPPT EELPRPKIHS  120
FCKILTASDT STHGGFSVLR KHATECLPPL DMSQPTPTQE LVAKDLHGYE WRFKHIFRGQ  180
PRRHLLTTGW STFVTSKRLV AGDTFVFLRG ENGELRVGVR RLARQSSSMP SSVISSQSMH  240
LGVLATASHA VATQTLFVVY YKPRTSQFIV SVNKYLSAVS NKFAVGMRFR MRFESDDSAE  300
SDKRFSGTIV GVEDISPHWA NSKWRSLKVQ WDEPSAITRP DRVSPWEIEP FVSSASTATV  360
QPTAAKTKRP RPTSEIPDVD TTSAASIFWD ARMSQTDMTQ RIMNSKTNNN ATLRNQTEGS  420
WLSSPRSSYP SHLLHDTTDD GKSVSAWPVS QPQSSILNID RMLDQVEKDN KVETATTYRL  480
FGIDLIDHSK KSAAVEIPSS HAVNGNGVTT EVSSSTLSSS DTARKSDISK ASFERKQEPQ  540
QVSPKETQSK QICSRSRTKV QMQGVAVGRA VDLATLNGYD QLIGELEELF DIKGQLQHRN  600
TWEIVFTDDE GDMMLVGDDP WPEFCNMVRR IFICSSQDVK KMKSGSKLPI SSSIEEGTVI  660
SSDTTER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1671935322357Auxin response factor 1
4ldw_A1e-1671935322357Auxin response factor 1
4ldw_B1e-1671935322357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367371KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.93390.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g021580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604938.20.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLG7JUG10.0G7JUG1_MEDTR; Auxin response factor
STRINGAES871350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]