PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g021760.1
Common NameMTR_4g021760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 313aa    MW: 35844.3 Da    PI: 6.7046
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g021760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.11.2e-25169222155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rl W+peLH+rF+ av+qL G ++A Pk+il++m+v+ +t e+v+SHLQkYR 
  Medtr4g021760.1 169 KARLSWSPELHQRFLWAVNQL-GLDRAMPKKILKIMDVPNMTKEQVASHLQKYRN 222
                      68*******************.********************************6 PP
2Response_reg48.64.5e-17171221107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                      vl +d + ++++ +++++++ +y +v+ ++ +++a ++l++kd +D++l+D  mp+md+++++++   +  ++p+i++   ++e+ + + ++ G
  Medtr4g021760.1  17 VLAIDHDITLLNSIEEMCNRCNY-KVTKCSMASDAFNMLERKDcFDVMLIDPHMPNMDAYDFVQSVVLQL-NIPVIMMAVDSAESSIMKSIQCG 108
                      6888999999*************.******************************************6654.7********************** PP

                      ESEEEESS--HHHH CS
     Response_reg  94 akdflsKpfdpeel 107
                      a ++ +Kp  +++ 
  Medtr4g021760.1 109 ACECWTKPLVEKQF 122
                      ********877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-2113142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.5E-2614159No hitNo description
SMARTSM004489.7E-1015126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.84316130IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-1217124IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.61E-1218130No hitNo description
Gene3DG3DSA:1.10.10.602.0E-26166225IPR009057Homeodomain-like
PROSITE profilePS5129410.382166225IPR017930Myb domain
SuperFamilySSF466892.6E-19167226IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-22169222IPR006447Myb domain, plants
PfamPF002499.6E-7171221IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALFTDKPAS FPEGLKVLAI DHDITLLNSI EEMCNRCNYK VTKCSMASDA FNMLERKDCF  60
DVMLIDPHMP NMDAYDFVQS VVLQLNIPVI MMAVDSAESS IMKSIQCGAC ECWTKPLVEK  120
QFKTMWQHVI RKGLTANKEY EIVGSSVVQE IRKRGREDDN ASKETQAKKA RLSWSPELHQ  180
RFLWAVNQLG LDRAMPKKIL KIMDVPNMTK EQVASHLQKY RNYLKSSTED TKGRMKKLKK  240
SPFETKFSLE ATHSLPEQDQ SFLLNSATQC RDNCDAQHHW LEIGESYIIS NIFSDLPNLF  300
PYVDDDLSSL VW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16165225161ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g021760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455007.10.0two-component response regulator ORR26
TrEMBLA0A072UT380.0A0A072UT38_MEDTR; Response regulator receiver domain protein
STRINGAES700061e-120(Medicago truncatula)
STRINGAES873031e-120(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-55response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]