PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g021790.1
Common NameMTR_4g021790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 275aa    MW: 31380.2 Da    PI: 7.5537
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g021790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.71.7e-25168222156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+rl W+peLH+rF+ av+qL G +k  Pk il++m+v+gL++ hv+SHLQkYR++
  Medtr4g021790.1 168 KARLSWSPELHQRFLWAVNQL-GLDKSRPKMILKIMDVPGLSVGHVASHLQKYRIH 222
                      68*******************.********************************86 PP
2Response_reg56.12e-19161201106
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                      v+ +d + +v++ ++ ++++ +y +v+ + ++++al+ll++kd +D++l+D  mp+md+++++++ + +  ++p+i++    + + + + ++ G
  Medtr4g021790.1  16 VIAIDHDITVLNTIEDMCNRFHY-QVTKCNTASDALNLLERKDcFDVMLIDPHMPNMDAYDFVQHVTLQL-NIPVIMMAVDFTTSSIMKSIQCG 107
                      5667888999*************.******************************************8765.9********************** PP

                      ESEEEESS--HHH CS
     Response_reg  94 akdflsKpfdpee 106
                      a+ +l+Kp  +ee
  Medtr4g021790.1 108 ASTYLTKPLVEEE 120
                      ********87776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.0E-2613152No hitNo description
SuperFamilySSF521721.14E-2313151IPR011006CheY-like superfamily
SMARTSM004481.1E-1414125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.33615129IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1416121IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.34E-1819128No hitNo description
Gene3DG3DSA:1.10.10.607.9E-27165225IPR009057Homeodomain-like
PROSITE profilePS512949.613165224IPR017930Myb domain
SuperFamilySSF466893.94E-17166225IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-20168222IPR006447Myb domain, plants
PfamPF002493.2E-6170220IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFFIDNPSF PAGLKVIAID HDITVLNTIE DMCNRFHYQV TKCNTASDAL NLLERKDCFD  60
VMLIDPHMPN MDAYDFVQHV TLQLNIPVIM MAVDFTTSSI MKSIQCGAST YLTKPLVEEE  120
VKIMWQHVVR KGVTENKECE IVESLVVQEC RKRGREDDKV SKETNAKKAR LSWSPELHQR  180
FLWAVNQLGL DKSRPKMILK IMDVPGLSVG HVASHLQKYR IHLKRSADET KPGKKKTKWS  240
DSSQAEWIDQ NRNDDFLAKW IDCGAGSYLH NLMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-15168220255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g021790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023481e-42CU302348.1 Medicago truncatula chromosome 5 clone mth2-45a24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455011.10.0two-component response regulator ARR14
TrEMBLA0A072UH210.0A0A072UH21_MEDTR; Putative response regulator and transcription factor RR-A-type family
STRINGAES975012e-97(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.14e-61response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]