PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g021845.1
Common NameMTR_4g021845
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 222aa    MW: 25364.4 Da    PI: 6.9879
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g021845.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.14.6e-24168218152
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                      k+rl W+peLH+rF+ av+qL G ++AtPk+i ++m+v+++t +hv+SHLQ 
  Medtr4g021845.1 168 KARLSWSPELHQRFLYAVNQL-GLDRATPKKIQKIMDVPDVTKQHVASHLQV 218
                      68*******************.*****************************5 PP
2Response_reg53.31.6e-18171212107
                      EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
     Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                      + +d + ++++ +++++++ +y +v+ + ++++al+ +++kd +D++l+D  mp+md ++++++ +    k+p+i++   ++++ + + ++ Ga
  Medtr4g021845.1  17 IAIDHDITFLNSIEEMCNRYHY-QVTKCNTASDALNSMERKDcFDVMLIDAHMPNMDVYDFVQHVTLLL-KIPVIMMAVDSTKSSIMKSIECGA 108
                      567888899*************.*******************9**********************9988.9*********************** PP

                      SEEEESS--HHHH CS
     Response_reg  95 kdflsKpfdpeel 107
                        + +Kp ++ee+
  Medtr4g021845.1 109 CTYWTKPLAEEEV 121
                      *******999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-2313151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-2613146No hitNo description
SMARTSM004482.8E-1214125IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.69615129IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.2E-1416122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.03E-1419128No hitNo description
SuperFamilySSF466892.6E-16166220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-23167218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21168220IPR006447Myb domain, plants
PfamPF002492.0E-5170219IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016310Biological Processphosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAVFTDNPSF PAGLKVIAID HDITFLNSIE EMCNRYHYQV TKCNTASDAL NSMERKDCFD  60
VMLIDAHMPN MDVYDFVQHV TLLLKIPVIM MAVDSTKSSI MKSIECGACT YWTKPLAEEE  120
VKIMWQHVVR KGKTENKEYE IVESLVVQEC RKRGREDADA SKETLAKKAR LSWSPELHQR  180
FLYAVNQLGL DRATPKKIQK IMDVPDVTKQ HVASHLQVHF C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g021845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023482e-40CU302348.1 Medicago truncatula chromosome 5 clone mth2-45a24, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455021.11e-167two-component response regulator ARR14
TrEMBLA0A072UH321e-166A0A072UH32_MEDTR; Two-component sensor histidine kinase, putative
STRINGAES700065e-86(Medicago truncatula)
STRINGAES873035e-86(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-54response regulator 14
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]