PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g023980.1
Common NameMTR_4g023980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 179aa    MW: 20453.1 Da    PI: 8.9116
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g023980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like24.84.8e-08149169222
          G2-like   2 prlrWtpeLHerFveaveqLG 22 
                      +r  W+peLH+rF+ av+qLG
  Medtr4g023980.1 149 ARFSWSPELHQRFLWAVNQLG 169
                      699*****************6 PP
2Response_reg29.53.8e-11369741103
                      HHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS-- CS
     Response_reg  41 ekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfd 103
                      +   +D++l+D +mp+md+ +++++   +  ++p i++   ++++ + + ++ Ga ++ +Kp  
  Medtr4g023980.1  36 K-CcFDVMLIDARMPNMDACDFVQHVSLQL-QIPAIMMAVDSTKNSIMKSIECGACEYWTKPLI 97 
                      3.249*********************7755.8******************************64 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011015.6491109IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-734102IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.55E-1336126IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.2E-1638129No hitNo description
CDDcd001563.25E-739109No hitNo description
Gene3DG3DSA:1.10.10.602.0E-7146173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTSLSLIPSR RCVIDAIIKL PNVMWLLMHW ICWTKKCCFD VMLIDARMPN MDACDFVQHV  60
SLQLQIPAIM MAVDSTKNSI MKSIECGACE YWTKPLIEKK FKTMWQHVAR KGMPENKEYA  120
IVGSSMVQAN RKRGREDADA SKETHAKTAR FSWSPELHQR FLWAVNQLGL DSMILSTA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g023980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455007.16e-73two-component response regulator ORR26
RefseqXP_013455021.13e-73two-component response regulator ARR14
TrEMBLG7JEK11e-130G7JEK1_MEDTR; Putative response regulator and transcription factor RR-A-type family
STRINGAES700061e-127(Medicago truncatula)
STRINGAES873031e-127(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-26response regulator 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]