PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g026485.1
Common NameMTR_4g026485
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 626aa    MW: 70120.9 Da    PI: 5.5387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g026485.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.48.2e-952686243374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L++ Ae +++g+  +aq +Larl+++ sp g+p+qR+ +y++eAL+  l++      +  + ++ s+ + + ++ a+k fse+sP+l+f+++
  Medtr4g026485.1 268 DQLFKTAELIEAGNPVQAQGILARLNHQLSPIGNPFQRASFYMKEALQLMLHS------NGNNLTAFSPISFIFKIGAYKSFSEISPVLQFANF 355
                      68***************************************************......44455555555689********************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      t+Nq + ea+e+ +r+H+iDfdi+ G+QW +++q++  R++g+psl+iT+v+sp+s ++ el+ t+e+L+++A+ l++ fefnvl   ++e+l+
  Medtr4g026485.1 356 TCNQSLIEALERFDRIHVIDFDIGFGVQWSSFMQEIVLRSNGKPSLKITAVVSPSSCNEIELNFTQENLSQYAKDLNILFEFNVL---NIESLN 446
                      ************************************************************************************9...555555 PP

             GRAS 191 leeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      l +       ++++Ea+ Vn+ ++  ++     s +s+ +  L+++k+l+Pk+vv  ++++d+ + ++ + +++ l++ysal++sl+a    + 
  Medtr4g026485.1 447 LPSCplpghFFDSNEAIGVNFPVS--SFI----SNPSCFPVALHFLKQLRPKIVVTLDKNCDRMDVPLPTNVVHVLQCYSALLESLDAV-NVNL 533
                      5554223424556*********95..444....34556667*********************************************665.3466 PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +  +k+Er+++++ i ++v   +++    + +l  Wr+++ ++GF+p ++s+++++qa++l+++ +++g++ve +  slvl+W++++L+svS W
  Medtr4g026485.1 534 DVLQKIERHYIQPTINKIVLSHHNQ----RDKLPPWRNMFLQSGFSPFSFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTW 623
                      999******************9998....6779************************************************************* PP

             GRAS 374 r 374
                      r
  Medtr4g026485.1 624 R 624
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.779240604IPR005202Transcription factor GRAS
PfamPF035142.8E-92268624IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MKALHLTFEE FQVKGVLDNF SSTSNSVSDS FSLLLNQPQQ QNWSLDKEDY CYVEPTSVLD  60
SRRSPSPPFS SSTMSSSHGS GSNGNGSNNN TSMVISENLA HLSNDDNSEE KCGGGGMRME  120
DWEGQDQSLL RLIMGDVEDP SAGLNKILQN SGYGSQNVDF HGGFGVLDHQ QQQGLTMMDA  180
SVQQGNYNVF PFIPENYNVL PLLDSGQEVF ARRHQQQETQ LPLFPHHYLQ HQQQQQQSSV  240
VPFAKQQKVS SSTTGDDASI QLQQSIFDQL FKTAELIEAG NPVQAQGILA RLNHQLSPIG  300
NPFQRASFYM KEALQLMLHS NGNNLTAFSP ISFIFKIGAY KSFSEISPVL QFANFTCNQS  360
LIEALERFDR IHVIDFDIGF GVQWSSFMQE IVLRSNGKPS LKITAVVSPS SCNEIELNFT  420
QENLSQYAKD LNILFEFNVL NIESLNLPSC PLPGHFFDSN EAIGVNFPVS SFISNPSCFP  480
VALHFLKQLR PKIVVTLDKN CDRMDVPLPT NVVHVLQCYS ALLESLDAVN VNLDVLQKIE  540
RHYIQPTINK IVLSHHNQRD KLPPWRNMFL QSGFSPFSFS NFTEAQAECL VQRAPVRGFQ  600
VERKPSSLVL CWQRKELISV STWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-3027462327378Protein SCARECROW
5b3h_A7e-3027462326377Protein SCARECROW
5b3h_D7e-3027462326377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.1100.0leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g026485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1212380.0AC121238.17 Medicago truncatula clone mth2-34p9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455102.10.0scarecrow-like protein 6
RefseqXP_024637920.10.0scarecrow-like protein 6
TrEMBLA0A072UTD00.0A0A072UTD0_MEDTR; GRAS family transcription regulator
STRINGAES873940.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-124GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]