PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g027040.1
Common NameMTR_4g027040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-X1
Protein Properties Length: 1012aa    MW: 109931 Da    PI: 7.9983
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g027040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.42.1e-05201219119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+C ++CH+GpC+ C+
  Medtr4g027040.1 201 CGRHRCHQICHLGPCDLCR 219
                      ***************9885 PP
2zf-NF-X119.22.6e-06265284120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C+++CH+G C +Cp+
  Medtr4g027040.1 265 CGNHMCIETCHPGSCVECPL 284
                      ******************95 PP
3zf-NF-X1171.3e-05323341119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H C  +CH G+C pC+
  Medtr4g027040.1 323 CGMHHCTLTCHDGDCSPCS 341
                      ******************6 PP
4zf-NF-X116.12.5e-05530545116
         zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                      CG H C+++CH  pC+
  Medtr4g027040.1 530 CGLHACSRICHSSPCD 545
                      ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.83E-538102No hitNo description
PROSITE profilePS500168.93844100IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135904797IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.3474798IPR001841Zinc finger, RING-type
CDDcd060084.33E-6131184No hitNo description
SMARTSM004380.023146164IPR000967Zinc finger, NF-X1-type
PfamPF014227.5148163IPR000967Zinc finger, NF-X1-type
CDDcd060088.91E-10191239No hitNo description
PfamPF014220.0012201219IPR000967Zinc finger, NF-X1-type
SMARTSM004380.075201220IPR000967Zinc finger, NF-X1-type
CDDcd060081.91E-7255298No hitNo description
PfamPF014220.0012265283IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011265284IPR000967Zinc finger, NF-X1-type
CDDcd060089.90E-13313361No hitNo description
PfamPF014223.1E-4323341IPR000967Zinc finger, NF-X1-type
SMARTSM004389.1E-4323342IPR000967Zinc finger, NF-X1-type
PfamPF0142217381392IPR000967Zinc finger, NF-X1-type
SMARTSM00438120381412IPR000967Zinc finger, NF-X1-type
CDDcd060083.50E-8410462No hitNo description
PfamPF014220.0044420437IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0031420439IPR000967Zinc finger, NF-X1-type
CDDcd060082.42E-4467515No hitNo description
SMARTSM004386.9477495IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015530545IPR000967Zinc finger, NF-X1-type
SMARTSM004380.7530559IPR000967Zinc finger, NF-X1-type
PfamPF014228.4561587IPR000967Zinc finger, NF-X1-type
SMARTSM004380.73568589IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.1E-4800855IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MSFQRRDNRV PRRRQQWTPR PSSTTNQLLP QLLQEIQDKL TKGTVECMIC YDIVRRSSPI  60
WSCSSCYSIF HLNCTTKWAR APTSSSQTSI DWRCPGCQSV QLTSSNSIRY FCFCGKTPDP  120
ASDFYLTPHS CGEPCGKPLQ KTGDLCPHVC VLQCHPGPCP PCKAFAPPRL CPCGKITITT  180
RCSDDQSLIT CGQQCQKLLQ CGRHRCHQIC HLGPCDLCRV PIDASCFCKK SLEVILCGDM  240
AVKGEYKAEA GVYSCGSTCG NKLACGNHMC IETCHPGSCV ECPLLPTNVK TCFCGKTRLG  300
EERLSCLDPI PTCSQVCGKT LPCGMHHCTL TCHDGDCSPC SVLVSQKCRC GSTSKTVECC  360
KKTMANEKFT CEKPCGKKRN CGRHRCSERC CPLSNPNNIL NATDSDPHLC SIPCGKKLRC  420
GKHACDSNCH SGHCPPCLET IFTDLTCACG KTSIPPPLPC GTPSPSCQLP CSVPQPCGHP  480
ASHSCHHGDC PPCVAPVARE CVGGHVVLRN IPCSSRDIRC NKLCGKTKQC GLHACSRICH  540
SSPCDNQHVV QGIRTSCGQS CGAPRRDCRH TCTAPCHPSS PCPDRRCGFA VAITCTCGRL  600
TTNVPCDAGG SDVDSMHEAS IIQKLLVPLQ PLDPNGKKVP LGQRKLMCND ECAKLERKRV  660
LANAFEISTP NLDSFQFGEN SVAHSELLAD LLRRDSKWVL SVEERCKYLV LGKGKGTTHG  720
LKSHVFCPML KDKRDAVRMI ADRWKLAINE AGREPKKFIV VHVVQKSRAP SRVLGIKGTT  780
TIPSLLPPAF NSLVDMDPRL VVSFPDLPRD TNICALVLRF GGECELVWLN DKNALAVFND  840
PARSATAMRR LDHGSVYQGA IVAVPNTGTS VASSVTTDRG GAETVKGGAL TTLTGYMWKQ  900
AVIIEPACRE DSWDDQEGTT DCANIQSSIW KKEAPISTSS NPWTVLNQEW SSSSSANASI  960
KADTNMKQTE SNSVAKSESG DGGSNLEHQH GRAFDTLEAY DVVDDWETTC E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.110840.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g027040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605239.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLG7JH330.0G7JH33_MEDTR; NF-X1-type zinc finger protein NFXL1
STRINGAES874360.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]