PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g028720.1
Common NameMTR_4g028720
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18640.7 Da    PI: 10.234
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g028720.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49.1e-141047239
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +i+n+s r+ t+ +R++gi+KK  EL +LC++ ++ ii
  Medtr4g028720.1 10 FISNDSTRKATYKRRKKGIIKKVRELTILCGIPACAII 47
                     8**********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035147IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-18160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-20179IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-7323IPR002100Transcription factor, MADS-box
PfamPF003196.0E-131050IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MARKKVKLAF ISNDSTRKAT YKRRKKGIIK KVRELTILCG IPACAIISDP FDSKTEVWPN  60
LKEAKQMIER YQSSYMKDGR KNVNQESFLL QKITKAREQL RMQRHDNHEN ELNILMIWYL  120
QNNKLPDDVT VSDLKDLDKL IEKNLKEIDD KMASLSLSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFISNDSTRKATYKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g028720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095300.0AC209530.2 Medicago truncatula chromosome 7 BAC clone mte1-84j4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605334.11e-114agamous-like MADS-box protein AGL80
TrEMBLG7JJI51e-112G7JJI5_MEDTR; MADS-box transcription factor family protein
STRINGAES875311e-113(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]