PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g028800.1
Common NameMTR_4g028800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 74aa    MW: 8297.82 Da    PI: 10.4736
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g028800.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.7e-171448842
                     HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      r++t+ kR++g++KK +ELS+LC++e++ i++++
  Medtr4g028800.1 14 ARKTTYNKRQKGLFKKVYELSTLCGVEACAIVYGP 48
                     599******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-16158IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-18271IPR002100Transcription factor, MADS-box
CDDcd002665.47E-24468No hitNo description
PfamPF003198.6E-171348IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.321547IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MPWKKVKLAF IANARKTTYN KRQKGLFKKV YELSTLCGVE ACAIVYGPYE PQPKIWPSPQ  60
GVQTVLSKIQ NNV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g028800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2026012e-47AC202601.24 Medicago truncatula clone mth2-91e16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605525.16e-32agamous-like MADS-box protein AGL80
SwissprotQ7XJK56e-21AGL90_ARATH; Agamous-like MADS-box protein AGL90
TrEMBLA0A072UHG63e-46A0A072UHG6_MEDTR; MADS-box transcription factor family protein
STRINGAES877222e-31(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.25e-24M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]