PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g033295.1
Common NameMTR_4g033295
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 195aa    MW: 21550.1 Da    PI: 5.1045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g033295.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12130175655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + ae+L +Av Y+k Lq
  Medtr4g033295.1 130 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTAEMLDEAVAYVKFLQ 175
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.729124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-17126191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.12E-12128179No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16129188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9130175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MQPVSGGGGG GLTRFNSTPA SWLESFILKE EDEVDERQQD HSLSFTQLLS NNNVAAGPGP  60
GPSTPESHPY LSDYYSSPLT PTSANVANNP FTQGVEDSGI AIDLKMDKIL EDSVPCKIRA  120
KRGFATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKQTNT AEMLDEAVAY VKFLQNQIEE  180
LSEQQRRCKC TIPE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.166730.0flower| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g033295.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1470500.0BT147050.1 Medicago truncatula clone JCVI-FLMt-21K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455273.11e-144transcription factor bHLH80
SwissprotQ9C8P83e-49BH080_ARATH; Transcription factor bHLH80
TrEMBLI3T2V21e-143I3T2V2_MEDTR; Putative transcription factor bHLH family
STRINGGLYMA08G26110.18e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-41bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]