PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g033295.3
Common NameMTR_4g033295
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 186aa    MW: 20702.3 Da    PI: 5.6556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g033295.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.4e-06130153629
                      HHHHHHHHHHHHHHHHHHHCTSCC CS
              HLH   6 nerErrRRdriNsafeeLrellPk 29 
                      +++Er RR ri +++ +L+el+P+
  Medtr4g033295.3 130 SIAERVRRTRISDRIRKLQELVPN 153
                      689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-6126156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-4128156No hitNo description
Gene3DG3DSA:4.10.280.102.3E-5129156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MQPVSGGGGG GLTRFNSTPA SWLESFILKE EDEVDERQQD HSLSFTQLLS NNNVAAGPGP  60
GPSTPESHPY LSDYYSSPLT PTSANVANNP FTQGVEDSGI AIDLKMDKIL EDSVPCKIRA  120
KRGFATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKVLLF ILKHYNLFVF MFFDYQTNDL  180
VQDII*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.166730.0flower| root| seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g033295.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1470500.0BT147050.1 Medicago truncatula clone JCVI-FLMt-21K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455273.11e-113transcription factor bHLH80
TrEMBLA0A072UJN71e-135A0A072UJN7_MEDTR; Transcription factor
STRINGXP_008459678.12e-35(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-20bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]