PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g035430.1
Common NameMTR_4g035430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 223aa    MW: 25124.7 Da    PI: 5.3697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g035430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-163080155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s ++GVr ++ +gr+v+eIr p   g+++r++lg+f +ae+Aa+a++ a+  l+g
  Medtr4g035430.1 30 SVFHGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFESAEMAARAYDSAAFFLKG 80
                     6799***888.**********8...557***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-93080IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-193089IPR016177DNA-binding domain
CDDcd000189.26E-273089No hitNo description
Gene3DG3DSA:3.30.730.102.3E-283189IPR001471AP2/ERF domain
PROSITE profilePS5103220.2713188IPR001471AP2/ERF domain
SMARTSM003802.2E-303194IPR001471AP2/ERF domain
PRINTSPR003674.5E-83243IPR001471AP2/ERF domain
PRINTSPR003674.5E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSITKESESQ SQAEARPGSI TKRSSRKGDS VFHGVRKRSW GRYVSEIRLP GQKTRIWLGS  60
FESAEMAARA YDSAAFFLKG NSASLNFPEE VEFLPRPLSS SRRDIQSAAS KAAHQRSHHH  120
QQQEEQLRGV TPSSSSSTRM NENNIINNSD DNIISGNNNV NDFSIEMMEW WKEEECVSTT  180
SFWDVEDAPL MSPTRVGSIF GDMMTWNEVF NFNDDNSLVY VP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153291363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-1532901574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.120740.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g035430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1452890.0AC145289.62 Medicago truncatula clone mth2-7g18, complete sequence.
GenBankAC1608420.0AC160842.52 Medicago truncatula clone mth2-27a2, complete sequence.
GenBankAC2255440.0AC225544.5 Medicago truncatula clone mth2-75e9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605655.21e-164ethylene-responsive transcription factor ERF038
TrEMBLA0A396I4Q31e-162A0A396I4Q3_MEDTR; Putative transcription factor AP2-EREBP family
TrEMBLG7JRD31e-163G7JRD3_MEDTR; DNA-binding domain protein
STRINGAES878521e-158(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-31ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]