PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g035590.1
Common NameMTR_4g035590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 355aa    MW: 41163.8 Da    PI: 7.4019
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g035590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.7e-5481371129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++k+k     ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk 
  Medtr4g035590.1   8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC 100
                      69****************************.99**************964444222455*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  Medtr4g035590.1 101 IRN-TYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 137
                      **9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-597156IPR003441NAC domain
PROSITE profilePS5100557.828156IPR003441NAC domain
PfamPF023655.5E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMDVI REVDLNKMEP WDLQEKCKIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNTYKKIGM RKTLVFYKGR  120
APHGQKTDWI MHEYRLEDGN DPTNEDGWVV CRVFKKKNLF KIGSEGGSTH NQDQQMNNIS  180
STNQRSFMQR ENQYLLHQQQ HQNHHRNLSG FELEKPELSL HYQHLQNSQY SLFHSQPQPQ  240
PLQANFDYSY ASPLQTEQPI IVKQLMTNPR DCESGSDGLR YQVSESGIEV GSCEPPQEMG  300
VGRSGEGMNE WGMLDRLVNE DSTKEATRFE DANPNQINQL SLRGEMDFWG YGKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-52815817167NO APICAL MERISTEM PROTEIN
1ut4_B9e-52815817167NO APICAL MERISTEM PROTEIN
1ut7_A9e-52815817167NO APICAL MERISTEM PROTEIN
1ut7_B9e-52815817167NO APICAL MERISTEM PROTEIN
3swm_A9e-52815820170NAC domain-containing protein 19
3swm_B9e-52815820170NAC domain-containing protein 19
3swm_C9e-52815820170NAC domain-containing protein 19
3swm_D9e-52815820170NAC domain-containing protein 19
3swp_A9e-52815820170NAC domain-containing protein 19
3swp_B9e-52815820170NAC domain-containing protein 19
3swp_C9e-52815820170NAC domain-containing protein 19
3swp_D9e-52815820170NAC domain-containing protein 19
4dul_A9e-52815817167NAC domain-containing protein 19
4dul_B9e-52815817167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g035590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1608420.0AC160842.52 Medicago truncatula clone mth2-27a2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605666.10.0protein BEARSKIN1
SwissprotQ9SV871e-141BRN2_ARATH; Protein BEARSKIN2
TrEMBLG7JRE40.0G7JRE4_MEDTR; NAC transcription factor-like protein
STRINGAES878630.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-142NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]