PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g039380.1
Common NameMTR_4g039380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 118aa    MW: 12834.2 Da    PI: 4.3941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g039380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05829323
                     ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                     C+ Cg++F+++  L +H    H
  Medtr4g039380.1  8 CGECGTMFPSPQALAVHVVEeH 29
                     *****************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.58634IPR007087Zinc finger, C2H2
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSKPGFLCGE CGTMFPSPQA LAVHVVEEHH PDYILESSKQ GPPPINQPQS ENAQPGPQNV  60
EHQPQNALAP PQYVEHPPQN APTPPQNAPA PHVQPFDLNQ PPNVRDFDLN LPYTPDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g039380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365060.0AC136506.10 Medicago truncatula clone mth2-33c8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JTJ29e-77G7JTJ2_MEDTR; Putative transcription factor C2H2 family
STRINGAES879592e-77(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]