PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g039400.1
Common NameMTR_4g039400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 83aa    MW: 8998.1 Da    PI: 7.636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g039400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05629123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     ++C+dC+  F+++  L +H    H
  Medtr4g039400.1  6 FSCSDCNAKFPSPQVLAVHVIEqH 29
                     89*****************98775 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MTKAKFSCSD CNAKFPSPQV LAVHVIEQHH SNFILESSAK SQPPNHQPQP QNTPPPHVQP  60
IGLSQPPNVR TLNLDPPSKS DE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g039400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365061e-137AC136506.10 Medicago truncatula clone mth2-33c8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JTJ43e-51G7JTJ4_MEDTR; Uncharacterized protein
STRINGAES879615e-52(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]