PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g040430.1

Common Name

MTR_4g040430

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 199aa MW: 22445.5 Da PI: 9.095

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g040430.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.3e-14	49	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwe 77 +fY +YA+++GFs+r+ ++k+ k+++++ ++vC+k+ +++ + + + + ++++e+r+gCka + +k++ ++++ Medtr4g040430.1 49 DFYGNYAYNTGFSIRTMLKSKNnsqnKKSDKVHYVRYVCNKQPFKKGSLLNpnnrptsdspvviDFVKVKEKPEERVGCKAGIYLKLD--EVFN 140 6***********98655555455689999**********9998888899999999999888999***************9..8888 PP FAR1 78 vtkleleHnHela 90 v++ + H H+l Medtr4g040430.1 141 VYR-DVTHCHPLH 152 887.667888885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-11	49	152	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDLISTSSES GQLSVETSSL IHDSSQCYSP SNKESWKSLV FKTIKEIEDF YGNYAYNTGF 60 SIRTMLKSKN NSQNKKSDKV HYVRYVCNKQ PFKKGSLLNP NNRPTSDSPV VIDFVKVKEK 120 PEERVGCKAG IYLKLDEVFN VYRDVTHCHP LHKPEHLCYL RSFREVNEVQ GQLALINSKA 180 GMSMRTSYEV MGQGVGGT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g040430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU467812	0.0	CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013441754.1	1e-136	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A072UUH8	1e-146	A0A072UUH8_MEDTR; FAR1 DNA-binding domain protein
STRING	AES61431	1e-132	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14214	2	15

Link Out ? help Back to Top
Phytozome	Medtr4g040430.1
Entrez Gene	25491981

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]