PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g048250.1
Common NameMTR_4g048250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 130aa    MW: 15079.7 Da    PI: 11.5319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g048250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.73.7e-10743242
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42
                     +y+ Vr ++ +gr+vAeIrd ++    ++r++l  ++t e+A
  Medtr4g048250.1  7 CYRVVRKRP-WGRFVAEIRDpWK----KTRVWLVAYDTDEQA 43
                     59*******.**********883....5**********6666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-5743IPR001471AP2/ERF domain
PROSITE profilePS5103212.536745IPR001471AP2/ERF domain
SMARTSM003801.2E-4759IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-14845IPR001471AP2/ERF domain
PRINTSPR003676.4E-5819IPR001471AP2/ERF domain
CDDcd000182.82E-12853No hitNo description
SuperFamilySSF541711.05E-7846IPR016177DNA-binding domain
PRINTSPR003676.4E-53046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MAVKEICYRV VRKRPWGRFV AEIRDPWKKT RVWLVAYDTD EQATHGRASD GFRPTFVMME  60
ETDHHISRPN SAHRHVRFGR FSTWTVLGLV GWVFLVTGKI KQVVKGKKIQ NKGKKSIAKI  120
KQVTNFRTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g048250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297211e-140AC229721.9 Medicago truncatula clone mth2-80c7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JDK14e-90G7JDK1_MEDTR; AP2 domain class transcription factor
STRINGAES881337e-91(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15712710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-16ERF domain protein 12
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]