PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g049670.1
Common NameMTR_4g049670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 134aa    MW: 14960.5 Da    PI: 10.0587
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g049670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.24.6e-07491251091
             FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      + F+v +++s +     +  + ++vC  +g ++  k+k   +++ + + ++gC  k++  +   d+ w+++ l+  HnH+++p
  Medtr4g049670.1  49 ARFTVIIRRSCEG----RNAMLELVCEWSGDHKVPKRK--VKHEATRSRKCGCLFKVRGYLVWeDKAWKLAILNGIHNHAMVP 125
                      6677776665554....445799**********99988..666667778888888887666555****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087312.9E-567122IPR014842Transcription factor AFT
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MVENAGDDPG DRKPSVIDSI KVEAPIKVEA SVKVEASVKV EVRRQANIAR FTVIIRRSCE  60
GRNAMLELVC EWSGDHKVPK RKVKHEATRS RKCGCLFKVR GYLVWEDKAW KLAILNGIHN  120
HAMVPYLADG IKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g049670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482261e-156AC148226.7 Medicago truncatula clone mth2-5i20, complete sequence.
GenBankAC1743091e-156AC174309.10 Medicago truncatula clone mth2-139k12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JEQ63e-92G7JEQ6_MEDTR; FAR1 DNA-binding domain protein
STRINGAES712801e-55(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]