PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g052030.1
Common NameMTR_4g052030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 54aa    MW: 6413.2 Da    PI: 8.8182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g052030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY40.55.3e-1314512359
                     EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     +YY+C+++ +Cp+ +kve++++++++ ++tYegeHnh 
  Medtr4g052030.1 14 GYYKCSTQvDCPASRKVEKCKTQENTYIVTYEGEHNHA 51
                     5*****999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081113.758150IPR003657WRKY domain
SuperFamilySSF1182903.14E-13651IPR003657WRKY domain
SMARTSM007748.9E-8852IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-9951IPR003657WRKY domain
PfamPF031065.7E-81450IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 54 aa     Download sequence    Send to blast
MNFQKTYWAW RKYGYYKCST QVDCPASRKV EKCKTQENTY IVTYEGEHNH ANL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g052030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465572e-61AC146557.33 Medicago truncatula clone mth2-11l13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462897.22e-20probable WRKY transcription factor 35
TrEMBLG7JH992e-32G7JH99_MEDTR; WRKY family transcription factor
STRINGAES882954e-33(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-13WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]