PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g052620.1
Common NameMTR_4g052620
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 262aa    MW: 29816.1 Da    PI: 5.7565
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g052620.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.33.2e-4561362128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      ppGfrF Pt+eelv++yL++k++g ++ +++vi+ +di+ vePw+Lp+     +++++++w+fFs+ ++++a+g r+nr+t+ gyWkatg+   
  Medtr4g052620.1   6 PPGFRFFPTEEELVSFYLNNKLQGVTNAIDRVIPVIDINGVEPWNLPTlageLCREDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGY 99 
                      9****************************999***************546654455777*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  Medtr4g052620.1 100 VYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRA 136
                      ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.1885162IPR003441NAC domain
SuperFamilySSF1019415.36E-485160IPR003441NAC domain
PfamPF023656.5E-246135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEDIFPPGFR FFPTEEELVS FYLNNKLQGV TNAIDRVIPV IDINGVEPWN LPTLAGELCR  60
EDKEQWFFFS PGQEREARGG RPNRTTACGY WKATGSPGYV YSSDNKVIGV KKTMVFYKGK  120
APSGRKTKWK MNEYRAIQVS NQSNTATPQL RREFSLCRIY VISGSFRAFD RRPLERERVD  180
QLPVNEIDQN PFGATSTHQN ATSSFEISQL GGLQSTHMPP EVVGGSNSTN WHVNSNNENN  240
GDEVQFQESL WEWDSEHFNW S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-35516017163NO APICAL MERISTEM PROTEIN
1ut4_B5e-35516017163NO APICAL MERISTEM PROTEIN
1ut7_A5e-35516017163NO APICAL MERISTEM PROTEIN
1ut7_B5e-35516017163NO APICAL MERISTEM PROTEIN
4dul_A5e-35516017163NAC domain-containing protein 19
4dul_B5e-35516017163NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.226580.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g052620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0517660.0BT051766.1 Medicago truncatula clone MTYF5_F6_F7_F81G-H-6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013455804.10.0NAC domain-containing protein 90
SwissprotQ9FMR32e-81NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A072UVE90.0A0A072UVE9_MEDTR; NAC transcription factor-like protein
STRINGXP_004506197.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.28e-84NAC domain containing protein 61
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]