PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g057975.1
Common NameMTR_4g057975
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 205aa    MW: 23560.3 Da    PI: 10.2988
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g057975.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.55.2e-0979157790
             FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      A+++GF++++++s+         + ++vC k+g ++  +kk + ++ ++ + ++gC  ++   ++k +++w ++ l+  HnH++ 
  Medtr4g057975.1  79 ANKAGFTIVTQRSRLI-----NPMFRLVCEKSGAHKVPEKK-KPKHARTGSRKCGCLFMISGYQSKqTKEWGLNILNGVHNHTME 157
                      8999****99987776.....34789**********99999.8889999999*******98766666***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-679156IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVENAEDVPG ETKPNFVEFF GDVKLPKVEA KPNINGASEY VDSGVLPLQA HEVDTTRFFS  60
DDVKSKDREE LLEWARRQAN KAGFTIVTQR SRLINPMFRL VCEKSGAHKV PEKKKPKHAR  120
TGSRKCGCLF MISGYQSKQT KEWGLNILNG VHNHTMETTL KRHILEDRIK EDDKKIVRDL  180
TKSKMLPRNI LIHLMNKRPH WIKM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.248521e-170glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g057975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558820.0AC155882.2 Medicago truncatula chromosome 7 clone mte1-6p16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072UKS71e-151A0A072UKS7_MEDTR; FAR1 DNA-binding domain protein
STRINGSolyc00g012700.1.11e-117(Solanum lycopersicum)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]