PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g058910.1
Common NameMTR_4g058910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 403aa    MW: 45588.5 Da    PI: 10.0385
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g058910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.2e-19316349134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Medtr4g058910.1 316 CTHCEVTETPQWREGPKGPKTLCNACGVRYRSGR 349
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057310346IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-17310360IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14313373No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15314347IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.32E-16315372No hitNo description
PROSITE patternPS003440316341IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17316349IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSHGGIRKKW ERYIYVRVRT AQRVDSIHQL RELQIRASSS IIIIIHAPPP PLNFSFSSSD  60
LTQNSTSKQS LTGYLIRMDT ANMKNSWFFD KNFNGVSDEI LGDVVEFFDF PLEDVETDGV  120
EQDWNDQFKH LEEPSLGVFS IPSFELHGET QYEKPKLVNN FSAAELSHID RRNVVNSSLK  180
DRRGLLGKTA GPAYGKTIPI QNVSFNGTNL RGCRTYSPVS VFESSSYSSV ESYNFELPVI  240
PAKRPRGKRR RLSSFDRLFS IPFIPAFQKQ QSDKQRAGKS LCRAQKRPRK DDTSQLSDSI  300
ETKRSSLHES IAPRKCTHCE VTETPQWREG PKGPKTLCNA CGVRYRSGRL FPEYRPAASP  360
TFEASVHSNS HKKVLEIRKK VNQETVKGSS MLYLSSNLSG IL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.88840.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g058910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637963.10.0GATA transcription factor 11
RefseqXP_024637964.10.0GATA transcription factor 11
TrEMBLA0A072UK090.0A0A072UK09_MEDTR; GATA type zinc finger transcription factor family protein
STRINGXP_004506013.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.23e-36GATA transcription factor 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]