PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g058930.1
Common NameMTR_4g058930
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 699aa    MW: 77245.6 Da    PI: 7.4981
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g058930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.7e-24109210199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD+vvF   + 
  Medtr4g058930.1 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaAEPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL--RA 198
                      89****************************996555555..8************************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++el+v+++r+
  Medtr4g058930.1 199 ENGELCVGIRRA 210
                      9999******97 PP
2Auxin_resp118.26.9e-39278361183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Medtr4g058930.1 278 AVKLAANNQPFEVVYYPRASTPEFCVKASAVKAAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVVDPIRWPNSPWRLLQ 361
                      67899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-37102212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-29103210IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-21108209No hitNo description
PfamPF023621.9E-22109210IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183109211IPR003340B3 DNA binding domain
SMARTSM010194.3E-23109211IPR003340B3 DNA binding domain
PfamPF065079.4E-34278361IPR010525Auxin response factor
PROSITE profilePS5174519.098586666IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKESEKGYLD PQLWHACAGG MVQIPQVNSK VFYFPQGHAE HANTNIDLRV SVSPLILCKV  60
VGVKFMADPE TDEVFAVMKL LPLRNSELGY DEGGGGGDGL ENSEKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY AAEPPVQTVV AKDVHGELWK FRHIYRGTPR RHLLTTGWSS  180
FVNQKKLVAG DSVVFLRAEN GELCVGIRRA KKGIGGGFDG SSCGWTSGSG SNNVNCGIGP  240
FGAFSFFLKE ENKTLRNGCF DGNLSGRVRV RAEDVMEAVK LAANNQPFEV VYYPRASTPE  300
FCVKASAVKA AMRIQWCSGM RFKMPFETED SSRISWFMGT IASVQVVDPI RWPNSPWRLL  360
QVTWDEPDLL QNVKRVSPWL VELVSNVPVI HFSPFTPPRK KLRFPPNLDF PLDVQFLSPT  420
FSGNQLGPNS PFFGLSDNAP ACIQGARHAQ FGGISLSDLN LNNNKLQLGL FPTNIQHLDV  480
HSRISNSNNM MNNNDKTKES LSCLLSIGKK YDKSLEKSQS DDNVVKKHQF CLFGQPILTE  540
QQISRNCSEK NSVDDSKDKE KWFLDAFSAG KGSNAAEFSW QLGLDIGHCK VFLESEDVGR  600
TLDLSLLGSY EELYNKLANM FDLEKSEMLN HVFYRDATGA VKLIGEEPFS EFMKTAKRLT  660
ILTDSGSKNV RGAWITGTHK GEHGLDASNK TGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-79438246388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g058930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456002.10.0auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A072ULT30.0A0A072ULT3_MEDTR; Auxin response factor
STRINGXP_004506012.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]