PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g059710.1
Common NameMTR_4g059710, NF-YC7
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 180aa    MW: 20321.7 Da    PI: 10.2245
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g059710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.42.6e-1271161999
            NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                      + ++++d k h +P+ ri+ +lk +    ++s ea   + +a e f+ +l+  ++  + + ++++l  + ++ +v++ + +dfl d vp++
  Medtr4g059710.1  71 DDDEEEDAKTHVFPMNRIRTMLKGEISDLRVSQEAILAINNAAEKFLEQLAEDAYGCCAQDRKKSLSYNHLSRVVSKQKRYDFLSDFVPEK 161
                      5678899******************99999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.08E-1727154IPR009072Histone-fold
PfamPF008086.7E-1283145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-2183160IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MASSNNSVAE NNKKKTKKPQ TSTPTSKIKK DNKNIEKSKE NNNKNKKKLN FTNGNSKEQE  60
ESGRKKKHAK DDDEEEDAKT HVFPMNRIRT MLKGEISDLR VSQEAILAIN NAAEKFLEQL  120
AEDAYGCCAQ DRKKSLSYNH LSRVVSKQKR YDFLSDFVPE KVKAEDALRE TNSRGNKGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14566KKKLNFTNGNSKEQEESGRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24170.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g059710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182990.0JQ918299.1 Medicago truncatula nuclear transcription factor Y subunit C7 (NF-YC7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606405.11e-128DNA polymerase epsilon subunit 4
TrEMBLG7JPE71e-127G7JPE7_MEDTR; Core histone H2A/H2B/H3/H4
STRINGAES886021e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-26nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]