PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g059870.1
Common NameMTR_4g059870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 496aa    MW: 55948.5 Da    PI: 8.6419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g059870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146989323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+k F r  nL+ H r H
  Medtr4g059870.1 69 CEICNKGFQRDQNLQLHRRGH 89
                     *******************88 PP
2zf-C2H211.90.0007144166123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H + +
  Medtr4g059870.1 144 WKCEKCSKKYAVQSDWKAHSKIC 166
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-76689No hitNo description
PROSITE profilePS5015710.8246789IPR007087Zinc finger, C2H2
SMARTSM003550.116789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035578109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMSKQPFSVS PSNSNTMRAS SSNQVQHSNP NPNPVPSKKK RNLPGTPDPE SEVVAMSPKS  60
LMATNRFLCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRAN KDQIRKKVYV CPEKTCVHHE  120
PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKICGTRE YKCDCGTIFS  180
RKDSFITHRA FCDALTEQSA KITTVPAALS NFRNDHLTNT QTPRIPHIFP GFQFHSEFVN  240
SATSSEPPLG NYTNISQLHQ NSDIMQTMDV FGSQPQWLNY NNANLSLPML HGVMKQEQEE  300
NKDLSASVIS SLYLSRSQNQ NQQEAPNHLS VTTSLLQKES QMGSTRTIIT NDNNTVFNNL  360
NHFHIVHEVQ KFYNKQCESE ELNELVNLEG SNSSTNLGGG YLLNDSNNMF GIVNGTKDLD  420
HVVLSVDKET TNRQMYDSGS RSKEKNQMGF TRDFLGVGED DSMSRPFLQQ ELGEFNGMGS  480
LGNNLQSQYG NGHYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35140205368Zinc finger protein JACKDAW
5b3h_F3e-35140205368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193106KLKQRANKDQIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g059870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1393440.0AC139344.17 Medicago truncatula clone mth2-34b22, complete sequence.
GenBankAC1699790.0AC169979.24 Medicago truncatula clone mth2-174m19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606419.20.0protein indeterminate-domain 9
TrEMBLG7JPG10.0G7JPG1_MEDTR; C2H2 and C2HC zinc finger protein, putative
STRINGAES886160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-99C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]