PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g063100.1
Common NameMTR_4g063100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 254aa    MW: 29491.6 Da    PI: 5.4076
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g063100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32e-14956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+  v ++G ++W+ Ia+  g+ R++k+c++rw +yl
  Medtr4g063100.1  9 KGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYL 56
                     79********************************************97 PP
2Myb_DNA-binding53.65.1e-1762107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+ l  +++ ++G++ W++Iar+++ gRt++++k++w++++
  Medtr4g063100.1  62 RGKMTPQEERLVMELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.913456IPR017930Myb domain
SMARTSM007173.6E-13858IPR001005SANT/Myb domain
SuperFamilySSF466893.15E-288103IPR009057Homeodomain-like
PfamPF002492.9E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-191063IPR009057Homeodomain-like
CDDcd001674.73E-91156No hitNo description
PROSITE profilePS5129427.34257111IPR017930Myb domain
SMARTSM007176.6E-1661109IPR001005SANT/Myb domain
PfamPF002491.9E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2464110IPR009057Homeodomain-like
CDDcd001675.21E-1164107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVSQEISRKG PWTEQEDYKL AYFVGLFGDR RWDFIAKVSG LSRSGKSCRL RWVNYLHPDL  60
KRGKMTPQEE RLVMELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK RAQEKKHATP  120
SISSSPDQSS SCQSSHFSNS NHGVDSHASN KESEEENYQV QEIEQGYSMD DIWKDIAMSE  180
DDINVLQPDF DGTSEENSNN LSCPIMPSTS SWDYSYLDPL WVMDEEESKM LFPPIGDQYF  240
SFYDQQGNTF LTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2891104104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-27911058158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-27911058158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-2891104104C-Myb DNA-Binding Domain
1msf_C4e-2891104104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111830.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g063100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392880.0BT139288.1 Medicago truncatula clone JCVI-FLMt-11A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606615.21e-160transcription factor MYB59 isoform X1
SwissprotQ9LX824e-78MYB48_ARATH; Transcription factor MYB48
TrEMBLG7JTP30.0G7JTP3_MEDTR; Myb transcription factor
STRINGAES888121e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-79myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]