PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g064873.1
Common NameMTR_4g064873
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 174aa    MW: 19304.3 Da    PI: 5.6639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g064873.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-052345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ Fs+   L  H++ H
  Medtr4g064873.1 23 YECNFCKRGFSNAQALGGHMNIH 45
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-71950No hitNo description
Gene3DG3DSA:3.30.160.602.4E-52149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6142350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MESDQHDKGG DDQDAKQVNP RSYECNFCKR GFSNAQALGG HMNIHRKDKA KLKQQSSTNY  60
QTQLPSNLEG SSSEDLNKLL PNLNTNIVSQ QAPSRGDEIL VTQVRQQLPL FAESPTRNET  120
QINPQGQVQR EIITTQEALL LSAQDSSSEL DLELRLGPEP HDSSKPTGTR KFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g064873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456154.11e-125transcriptional regulator SUPERMAN
TrEMBLA0A072UWD41e-124A0A072UWD4_MEDTR; Putative transcription factor C2H2 family
STRINGAES889251e-121(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]