PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g066380.1
Common NameMTR_4g066380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 333aa    MW: 37371.5 Da    PI: 5.1762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g066380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-10153198454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ + f  L  l+P++     kK++K ++L  +++Y+k+L
  Medtr4g066380.1 153 DHIMAERNRREKLTQTFIALAALVPNL-----KKMDKLSVLVDTIKYMKEL 198
                      599************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.316149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-14153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-10154203No hitNo description
SMARTSM003532.2E-10155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEINNPAMK VSSISSWLTD LEMDEYNIFA EECNLNFLDA DVGGFLSQDI SNVFQEQNKQ  60
QCLSLGSTST NDLSKSFIHE TIDNSDKINK SLSPNLSPSF QFPIPKENET ISMSPTELEN  120
MNHSTETSKG SLENENLETK TSKSKRPRAH GRDHIMAERN RREKLTQTFI ALAALVPNLK  180
KMDKLSVLVD TIKYMKELKN RLEVVEEQNK KKNKSSTKPC LCSDEDSSSC DDSVECVVGS  240
PFQVEARVLG KQMLIRIQCQ EHKGLLVKIM VEIQRYQLFV VNSSVLPFGE STLDITIIAQ  300
LGEGYNLSTK ELVKNVRMAV LKFLGEAYVT PS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g066380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR3494660.0KR349466.1 Medicago truncatula triterpene saponin activating regulator 2 (TSAR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456258.10.0transcription factor bHLH18
TrEMBLA0A072UKL20.0A0A072UKL2_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGXP_004509037.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-35bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]